Fig. 7From: 3D reconstruction of biological structures: automated procedures for alignment and reconstruction of multiple tilt series in electron tomographySample warping caused by the electron beam radiation can be simultaneously monitored and corrected for in the multiple tilt process. A The variations of \(n_{3,\omega }\) (green lines), defined in Eq. (10) and based on the linear portion of the computed projection maps, are a good indicator of the sample deformation happening over the course of the data acquisition. Its main behavior can be reproduced (doted blue lines) by considering a simple model having three deformation rates (\(\gamma _X\), \(\gamma _Y\) and \(\gamma _Z\)) allowing their estimates after an adjustment procedure. \(n_{3,\omega }\) oscillates between two curves as the many different tilt series (a, b,…, p) are successively acquired between −60° and +60°. The lower bound curve, reached at high tilt angles (\(|\theta | =\pi /3\)), specifically depends on the sample compression along the normal axis, while the upper bound curve, reached at zero tilt, only depends on the lateral compressions. B Representation of the amount of compression along the three main sample directions versus the micrograph index. In the stationary region, the sample compression is estimated to be 2–4 % in the lateral directions and 15 % along the normal axisBack to article page