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  1. Methodology

    An environmental transfer hub for multimodal atom probe tomography

    Environmental control during transfer between instruments is required for samples sensitive to air or thermal exposure to prevent morphological or chemical changes prior to analysis. Atom probe tomography is a...

    Daniel E. Perea, Stephan S. A. Gerstl, Jackson Chin, Blake Hirschi and James. E. Evans

    Advanced Structural and Chemical Imaging 2017 3:12

    Published on: 2 May 2017

  2. Research

    Dynamic X-ray diffraction imaging of the ferroelectric response in bismuth ferrite

    X-ray diffraction imaging is rapidly emerging as a powerful technique by which one can capture the local structure of crystalline materials at the nano- and meso-scale. Here, we present investigations of the d...

    Nouamane Laanait, Wittawat Saenrang, Hua Zhou, Chang-Beom Eom and Zhan Zhang

    Advanced Structural and Chemical Imaging 2017 3:11

    Published on: 21 March 2017

  3. Research

    Atomap: a new software tool for the automated analysis of atomic resolution images using two-dimensional Gaussian fitting

    Scanning transmission electron microscopy (STEM) data with atomic resolution can contain a large amount of information about the structure of a crystalline material. Often, this information is hard to extract,...

    Magnus Nord, Per Erik Vullum, Ian MacLaren, Thomas Tybell and Randi Holmestad

    Advanced Structural and Chemical Imaging 2017 3:9

    Published on: 13 February 2017

  4. Research

    Nanosurveyor: a framework for real-time data processing

    The ever improving brightness of accelerator based sources is enabling novel observations and discoveries with faster frame rates, larger fields of view, higher resolution, and higher dimensionality.

    Benedikt J. Daurer, Hari Krishnan, Talita Perciano, Filipe R. N. C. Maia, David A. Shapiro, James A. Sethian and Stefano Marchesini

    Advanced Structural and Chemical Imaging 2017 3:7

    Published on: 31 January 2017

  5. Research

    Trace: a high-throughput tomographic reconstruction engine for large-scale datasets

    Modern synchrotron light sources and detectors produce data at such scale and complexity that large-scale computation is required to unleash their full power. One of the widely used imaging techniques that gen...

    Tekin Bicer, Doğa Gürsoy, Vincent De Andrade, Rajkumar Kettimuthu, William Scullin, Francesco De Carlo and Ian T. Foster

    Advanced Structural and Chemical Imaging 2017 3:6

    Published on: 28 January 2017

  6. Research

    Efficient implementation of a local tomography reconstruction algorithm

    We propose an efficient implementation of an interior tomography reconstruction method based on a known subregion. This method iteratively refines a reconstruction, aiming at reducing the local tomography arti...

    Pierre Paleo and Alessandro Mirone

    Advanced Structural and Chemical Imaging 2017 3:5

    Published on: 19 January 2017

  7. Research

    SYRMEP Tomo Project: a graphical user interface for customizing CT reconstruction workflows

    When considering the acquisition of experimental synchrotron radiation (SR) X-ray CT data, the reconstruction workflow cannot be limited to the essential computational steps of flat fielding and filtered back ...

    Francesco Brun, Lorenzo Massimi, Michela Fratini, Diego Dreossi, Fulvio Billé, Agostino Accardo, Roberto Pugliese and Alessia Cedola

    Advanced Structural and Chemical Imaging 2017 3:4

    Published on: 19 January 2017

  8. Methodology

    Data systems for the Linac coherent light source

    The data systems for X-ray free-electron laser (FEL) experiments at the Linac coherent light source (LCLS) are described. These systems are designed to acquire and to reliably transport shot-by-shot data at a ...

    J. Thayer, D. Damiani, C. Ford, M. Dubrovin, I. Gaponenko, C. P. O’Grady, W. Kroeger, J. Pines, T. J. Lane, A. Salnikov, D. Schneider, T. Tookey, M. Weaver, C. H. Yoon and A. Perazzo

    Advanced Structural and Chemical Imaging 2017 3:3

    Published on: 14 January 2017

  9. Research

    Towards on-the-fly data post-processing for real-time tomographic imaging at TOMCAT

    Sub-second full-field tomographic microscopy at third-generation synchrotron sources is a reality, opening up new possibilities for the study of dynamic systems in different fields. Sustained elevated data rat...

    Federica Marone, Alain Studer, Heiner Billich, Leonardo Sala and Marco Stampanoni

    Advanced Structural and Chemical Imaging 2017 3:1

    Published on: 3 January 2017

  10. Methodology

    Applying shot boundary detection for automated crystal growth analysis during in situ transmission electron microscope experiments

    In situ scanning transmission electron microscopy is being developed for numerous applications in the study of nucleation and growth under electrochemical driving forces. For this type of experiment, one of th...

    W. A. Moeglein, R. Griswold, B. L. Mehdi, N. D. Browning and J. Teuton

    Advanced Structural and Chemical Imaging 2017 3:2

    Published on: 3 January 2017

  11. Research

    Analyzing microtomography data with Python and the scikit-image library

    The exploration and processing of images is a vital aspect of the scientific workflows of many X-ray imaging modalities. Users require tools that combine interactivity, versatility, and performance. scikit-image ...

    Emmanuelle Gouillart, Juan Nunez-Iglesias and Stéfan van der Walt

    Advanced Structural and Chemical Imaging 2016 2:18

    Published on: 7 December 2016

  12. Methodology

    A distributed ASTRA toolbox

    While iterative reconstruction algorithms for tomography have several advantages compared to standard backprojection methods, the adoption of such algorithms in large-scale imaging facilities is still limited...

    Willem Jan Palenstijn, Jeroen Bédorf, Jan Sijbers and K. Joost Batenburg

    Advanced Structural and Chemical Imaging 2016 2:19

    Published on: 7 December 2016

  13. Review

    The MAX IV imaging concept

    The MAX IV Laboratory is currently the synchrotron X-ray source with the beam of highest brilliance. Four imaging beamlines are in construction or in the project phase. Their common characteristic will be the ...

    Zdeněk Matěj, Rajmund Mokso, Krister Larsson, Vincent Hardion and Darren Spruce

    Advanced Structural and Chemical Imaging 2016 2:16

    Published on: 1 December 2016

  14. Research

    Detecting structural variances of Co3O4 catalysts by controlling beam-induced sample alterations in the vacuum of a transmission electron microscope

    This article summarizes core aspects of beam-sample interactions in research that aims at exploiting the ability to detect single atoms at atomic resolution by mid-voltage transmission electron microscopy. Inv...

    C. Kisielowski, H. Frei, P. Specht, I. D. Sharp, J. A. Haber and S. Helveg

    Advanced Structural and Chemical Imaging 2016 2:13

    Published on: 2 November 2016

  15. Research

    Identifying local structural states in atomic imaging by computer vision

    The availability of atomically resolved imaging modalities enables an unprecedented view into the local structural states of materials, which manifest themselves by deviations from the fundamental assumptions ...

    Nouamane Laanait, Maxim Ziatdinov, Qian He and Albina Borisevich

    Advanced Structural and Chemical Imaging 2016 2:14

    Published on: 2 November 2016

  16. Research

    Structural damage reduction in protected gold clusters by electron diffraction methods

    The present work explores electron diffraction methods for studying the structure of metallic clusters stabilized with thiol groups, which are susceptible to structural damage caused by electron beam irradiati...

    Eduardo Ortega, Arturo Ponce, Ulises Santiago, Diego Alducin, Alfredo Benitez-Lara, Germán Plascencia-Villa and Miguel José-Yacamán

    Advanced Structural and Chemical Imaging 2016 2:12

    Published on: 26 September 2016

  17. Research

    Deceleration of probe beam by stage bias potential improves resolution of serial block-face scanning electron microscopic images

    Serial block-face scanning electron microscopy (SBEM) is quickly becoming an important imaging tool to explore three-dimensional biological structure across spatial scales. At probe-beam-electron energies of 2...

    James C. Bouwer, Thomas J. Deerinck, Eric Bushong, Vadim Astakhov, Ranjan Ramachandra, Steven T. Peltier and Mark H. Ellisman

    Advanced Structural and Chemical Imaging 2016 2:11

    Published on: 15 September 2016

  18. Research

    HRTEM low dose: the unfold of the morphed graphene, from amorphous carbon to morphed graphenes

    We present experimental evidence under low-dose conditions transmission electron microscopy for the unfolding of the evolving changes in carbon soot during mechanical milling. The milled soot shows evolving c...

    H. A. Calderon, A. Okonkwo, I. Estrada-Guel, V. G. Hadjiev, F. Alvarez-Ramírez and F. C. Robles Hernández

    Advanced Structural and Chemical Imaging 2016 2:10

    Published on: 22 August 2016

  19. Research

    Growth of dendritic nanostructures by liquid-cell transmission electron microscopy: a reflection of the electron-irradiation history

    Studying dynamical processes by transmission electron microscopy (TEM) requires considering the electron-irradiation history, including the instantaneous dose rate and the cumulative dose delivered to the samp...

    Nabeel Ahmad, Yann Le Bouar, Christian Ricolleau and Damien Alloyeau

    Advanced Structural and Chemical Imaging 2016 2:9

    Published on: 30 June 2016

  20. Research

    3D reconstruction of biological structures: automated procedures for alignment and reconstruction of multiple tilt series in electron tomography

    Transmission electron microscopy allows the collection of multiple views of specimens and their computerized three-dimensional reconstruction and analysis with electron tomography. Here we describe development...

    Sébastien Phan, Daniela Boassa, Phuong Nguyen, Xiaohua Wan, Jason Lanman, Albert Lawrence and Mark H. Ellisman

    Advanced Structural and Chemical Imaging 2016 2:8

    Published on: 28 June 2016

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